RESULTS SUMMARY
View List of Contigs
Total sequences analysed = 17590
Sequences sorted into 3003 contigs and 0 singletons
Total SNPs detected = 24948
Total consensus size = 2534368 bp
SNP frequency = 0.98/100 bp
Smallest contig = 2 sequences
Total transitions = 9945
Total transversions = 10175
Total indels = 4828
1333 contigs containing 2 sequences
1129(84.70)% of these contigs contain snps
with a total of 8872 snps
583 contigs containing 3 sequences
547(93.83)% of these contigs contain snps
with a total of 7438 snps
308 contigs containing 4 sequences
294(95.45)% of these contigs contain snps
with a total of 6049 snps
174 contigs containing 5 sequences
85(48.85)% of these contigs contain snps
with a total of 344 snps
125 contigs containing 6 sequences
88(70.40)% of these contigs contain snps
with a total of 477 snps
83 contigs containing 7 sequences
23(27.71)% of these contigs contain snps
with a total of 62 snps
68 contigs containing 8 sequences
31(45.59)% of these contigs contain snps
with a total of 153 snps
28 contigs containing 9 sequences
6(21.43)% of these contigs contain snps
with a total of 11 snps
33 contigs containing 10 sequences
15(45.45)% of these contigs contain snps
with a total of 35 snps
36 contigs containing 11 sequences
16(44.44)% of these contigs contain snps
with a total of 82 snps
34 contigs containing 12 sequences
20(58.82)% of these contigs contain snps
with a total of 76 snps
13 contigs containing 13 sequences
2(15.38)% of these contigs contain snps
with a total of 17 snps
16 contigs containing 14 sequences
7(43.75)% of these contigs contain snps
with a total of 39 snps
17 contigs containing 15 sequences
11(64.71)% of these contigs contain snps
with a total of 28 snps
5 contigs containing 16 sequences
3(60.00)% of these contigs contain snps
with a total of 8 snps
10 contigs containing 17 sequences
4(40.00)% of these contigs contain snps
with a total of 15 snps
11 contigs containing 18 sequences
2(18.18)% of these contigs contain snps
with a total of 8 snps
12 contigs containing 19 sequences
6(50.00)% of these contigs contain snps
with a total of 23 snps
6 contigs containing 20 sequences
5(83.33)% of these contigs contain snps
with a total of 13 snps
9 contigs containing 21 sequences
4(44.44)% of these contigs contain snps
with a total of 22 snps
4 contigs containing 22 sequences
3(75.00)% of these contigs contain snps
with a total of 7 snps
7 contigs containing 23 sequences
3(42.86)% of these contigs contain snps
with a total of 23 snps
3 contigs containing 24 sequences
2(66.67)% of these contigs contain snps
with a total of 19 snps
6 contigs containing 25 sequences
5(83.33)% of these contigs contain snps
with a total of 28 snps
4 contigs containing 26 sequences
3(75.00)% of these contigs contain snps
with a total of 18 snps
3 contigs containing 27 sequences
2(66.67)% of these contigs contain snps
with a total of 2 snps
4 contigs containing 28 sequences
4(100.00)% of these contigs contain snps
with a total of 15 snps
1 contigs containing 29 sequences
1(100.00)% of these contigs contain snps
with a total of 14 snps
3 contigs containing 30 sequences
1(33.33)% of these contigs contain snps
with a total of 2 snps
2 contigs containing 31 sequences
2(100.00)% of these contigs contain snps
with a total of 3 snps
3 contigs containing 32 sequences
3(100.00)% of these contigs contain snps
with a total of 28 snps
1 contigs containing 33 sequences
1(100.00)% of these contigs contain snps
with a total of 18 snps
2 contigs containing 34 sequences
2(100.00)% of these contigs contain snps
with a total of 31 snps
3 contigs containing 35 sequences
3(100.00)% of these contigs contain snps
with a total of 8 snps
4 contigs containing 36 sequences
4(100.00)% of these contigs contain snps
with a total of 10 snps
2 contigs containing 37 sequences
2(100.00)% of these contigs contain snps
with a total of 8 snps
2 contigs containing 39 sequences
2(100.00)% of these contigs contain snps
with a total of 19 snps
2 contigs containing 40 sequences
2(100.00)% of these contigs contain snps
with a total of 11 snps
3 contigs containing 41 sequences
3(100.00)% of these contigs contain snps
with a total of 20 snps
2 contigs containing 42 sequences
2(100.00)% of these contigs contain snps
with a total of 11 snps
2 contigs containing 43 sequences
2(100.00)% of these contigs contain snps
with a total of 9 snps
1 contigs containing 44 sequences
1(100.00)% of these contigs contain snps
with a total of 30 snps
2 contigs containing 47 sequences
2(100.00)% of these contigs contain snps
with a total of 29 snps
1 contigs containing 48 sequences
1(100.00)% of these contigs contain snps
with a total of 9 snps
1 contigs containing 51 sequences
1(100.00)% of these contigs contain snps
with a total of 15 snps
1 contigs containing 52 sequences
1(100.00)% of these contigs contain snps
with a total of 9 snps
1 contigs containing 53 sequences
1(100.00)% of these contigs contain snps
with a total of 4 snps
1 contigs containing 55 sequences
1(100.00)% of these contigs contain snps
with a total of 4 snps
1 contigs containing 57 sequences
1(100.00)% of these contigs contain snps
with a total of 6 snps
1 contigs containing 59 sequences
1(100.00)% of these contigs contain snps
with a total of 2 snps
1 contigs containing 60 sequences
1(100.00)% of these contigs contain snps
with a total of 30 snps
1 contigs containing 63 sequences
1(100.00)% of these contigs contain snps
with a total of 16 snps
1 contigs containing 65 sequences
1(100.00)% of these contigs contain snps
with a total of 1 snps
2 contigs containing 68 sequences
2(100.00)% of these contigs contain snps
with a total of 48 snps
1 contigs containing 71 sequences
1(100.00)% of these contigs contain snps
with a total of 13 snps
1 contigs containing 78 sequences
1(100.00)% of these contigs contain snps
with a total of 12 snps
1 contigs containing 81 sequences
1(100.00)% of these contigs contain snps
with a total of 24 snps
1 contigs containing 82 sequences
1(100.00)% of these contigs contain snps
with a total of 37 snps
1 contigs containing 90 sequences
1(100.00)% of these contigs contain snps
with a total of 27 snps
1 contigs containing 98 sequences
1(100.00)% of these contigs contain snps
with a total of 28 snps
1 contigs containing 100 sequences
1(100.00)% of these contigs contain snps
with a total of 50 snps
1 contigs containing 104 sequences
1(100.00)% of these contigs contain snps
with a total of 42 snps
2 contigs containing 105 sequences
2(100.00)% of these contigs contain snps
with a total of 52 snps
1 contigs containing 133 sequences
1(100.00)% of these contigs contain snps
with a total of 60 snps
1 contigs containing 136 sequences
1(100.00)% of these contigs contain snps
with a total of 45 snps
1 contigs containing 150 sequences
1(100.00)% of these contigs contain snps
with a total of 8 snps
1 contigs containing 154 sequences
1(100.00)% of these contigs contain snps
with a total of 32 snps
1 contigs containing 198 sequences
1(100.00)% of these contigs contain snps
with a total of 22 snps
1 contigs containing 216 sequences
1(100.00)% of these contigs contain snps
with a total of 4 snps
1 contigs containing 254 sequences
1(100.00)% of these contigs contain snps
with a total of 68 snps
1 contigs containing 273 sequences
1(100.00)% of these contigs contain snps
with a total of 61 snps
1 contigs containing 296 sequences
1(100.00)% of these contigs contain snps
with a total of 29 snps
1 contigs containing 303 sequences
1(100.00)% of these contigs contain snps
with a total of 11 snps
1 contigs containing 395 sequences
1(100.00)% of these contigs contain snps
with a total of 44 snps
