Contig Alignment

Base A B C D E F G
1 C C . . . . .
2 G G . . . . .
3 G G . . . . .
4 T T . . . . .
5 T T . . . . .
6 T T . . . . .
7 C C . . . . .
8 T T . . . . .
9 T T . . . . .
10 A A . . . . .
11 T T . . . . .
12 G G . . . . .
13 G G . . . . .
14 G G . . . . .
15 C C . . . . .
16 G G . . . . .
17 G G . . . . .
18 C C . . . . .
19 G G . . . . .
20 G G . . . . .
21 G G . . . . .
22 G G . . . . .
23 T T . . . . .
24 G G . . . . .
25 G G . . . . .
26 G G C C C C .
27 T T G G G G .
28 C C G G G G .
29 G G G G G G .
30 G G G G G G .
31 G G G G G G .
32 T T T T T T .
33 G G G G G G .
34 G G G G G G .
35 C C C C C C .
36 T T T T T T .
37 G G G G G G .
38 G G G G G G .
39 T T T T T T .
40 G G G G G G .
41 A A A A A A .
42 A A A A A A .
43 T T T T T T .
44 G G G G G G .
45 A A A A A A .
46 T T T T T T .
47 T T T T T T .
48 C C C C C C .
49 G G G G G G .
50 G G G G G G .
51 A A A A A A .
52 G G G G G G .
53 G G G G G G .
54 G G G G G G .
55 G G G G G G .
56 A A A A A A .
57 A A A A A A .
58 C C C C C C .
59 A A A A A A .
60 A A A A A A .
61 G G G G G G .
62 A A A A A A .
63 C C C C C C .
64 G G G G G G .
65 G G G G G G .
66 A A A A A A .
67 C C C C C C .
68 T T T T T T .
69 G G G G G G .
70 A A A A A A .
71 T T T T T T .
72 A A A A A A .
73 C C C C C C .
74 A A A A A A .
75 G G G G G G .
76 T T T T T T .
77 T T T T T T .
78 T T T T T T .
79 G G G G G G .
80 A A A A A A .
81 A A A A A A .
82 G G G G G G .
83 A A A A A A .
84 T T T T T T .
85 G G G G G G .
86 G G G G G G .
87 C C C C C C .
88 T T T T T T .
89 G G G G G G .
90 A A A A A A .
91 G G G G G G .
92 A A A A A A .
93 A A A A A A .
94 G G G G G G .
95 T T T T T T .
96 C C C C C C .
97 T T T T T T .
98 G G G G G G .
99 G G G G G G .
100 A A A A A A .
101 G G G G G G .
102 A A A A A A .
103 A A A A A A .
104 T T T T T T .
105 G G G G G G .
106 G G G G G G .
107 G G G G G G .
108 G G G G G G .
109 A A A A A A .
110 T T T T T T .
111 G G G G G G .
112 A A A A A A .
113 A A A A A A .
114 T T T T T T .
115 A A A A A A .
116 A A A A A A .
117 A A A A A A .
118 A A A A A A .
119 A A A A A A .
120 G G G G G G .
121 A A A A A A .
122 T T T T T T .
123 G G G G G G .
124 G G G G G G .
125 G G G G G G .
126 A A A A A A .
127 G G G G G G .
128 G G G G G G .
129 A A A A A A .
130 G G G G G G .
131 A A A A A A .
132 A A A A A A .
133 G G G G G G .
134 G G G G G G .
135 C C C C C C .
136 C C C C C C .
137 T T T T T T .
138 G G G G G G .
139 G G G G G G .
140 G G G G G G .
141 G G G G G G .
142 C C C C C C .
143 A A A A A A .
144 T T T T T T .
145 C C C C C C .
146 A A A A A A .
147 T T T T T T .
148 A A A A A A .
149 T T T T T T .
150 A A A A A A .
151 T T T T T T .
152 A A A A A A .
153 T T T T T T .
154 T T T T T T .
155 C C C C C C .
156 T T T T T T .
157 A A A A A A .
158 A A A A A A .
159 G G G G G G .
160 T T T T T T .
161 G G G G G G .
162 C C C C C C .
163 T T T T T T .
164 G G G G G G .
165 C C C C C C .
166 A A A A A A .
167 A A A A A A .
168 T T T T T T .
169 T T T T T T .
170 T T T T T T .
171 G G G G G G .
172 A A A A A A .
173 A A A A A A .
174 T T T T T T .
175 T T T T T T .
176 T T T T T T .
177 T T T T T T .
178 G G G G G G .
179 T T T T T T .
180 T T T T T T .
181 G G G G G G .
182 C C C C C C .
183 A A A A A A .
184 A A A A A A .
185 G G G G G G .
186 T T T T T T .
187 G G G G G G .
188 T T T T T T .
189 T T T T T T .
190 T T T T T T .
191 T T T T T T .
192 T T T T T T .
193 T T T T T T .
194 A A A A A A .
195 C C C C C C .
196 T T T T T T .
197 A A A A A A .
198 T T T T T T .
199 A A A A A A .
200 T T T T T T .
201 C C C C C C .
202 T T T T T T .
203 A A A A A A .
204 C C C C C C .
205 A A A A A A .
206 G G G G G G .
207 G G G G G G .
208 A A A A A A .
209 G G G G G G .
210 T T T T T T .
211 T T T T T T .
212 T T T T T T .
213 T T T T T T .
214 T T T T T T .
215 C C C C C C .
216 T T T T T T .
217 T T T T T T .
218 T T T T T T .
219 T T T T T T .
220 T T T T T T .
221 T T T T T T .
222 G G G G G G G
223 T T T T T T T
224 T T T T T T T
225 G G G G G G G
226 T T T T T T T
227 G G G G G G G
228 G G G G G G G
229 T T T T T T T
230 C C C C C C C
231 T T T T T T T
232 G G G G G G G
233 G G G G G G G
234 T T T T T T T
235 T T T T T T T
236 C C C C C C C
237 T T T T T T T
238 G G G G G G G
239 T T T T T T T
240 G G G G G G G
241 A A A A A A A
242 A A A A A A A
243 G G G G G G G
244 A A A A A A A
245 A A A A A G A
246 C C C C C C C
247 C C C C C C C
248 G G G G G G G
249 G G G G G G G
250 A A A A A A A
251 C C C C C C C
252 G G G G G G G
253 A A A A A A A
254 G G G G G G G
255 A A A A A A A
256 G G G G G G C
257 G G G G G G G
258 G G G G G G G
259 T T T T T T T
260 A A A A A A A
261 T T T T T T T
262 T T T T T T T
263 A A A A A A A
264 G G G G G G C
265 T T T T T T T
266 T T T T T T T
267 G G G G G G G
268 C C C C C C C
269 G G G G G G G
270 G G G G G G G
271 T T T T T T T
272 T T T T T T T
273 T T T T T T T
274 G G G G G G G
275 T T T T T T T
276 C C C C C C C
277 A A A A A A A
278 A A A A A G A
279 A A A A A A A
280 C C C C C C C
281 T T T T T T T
282 A A A A A A A
283 T T T T T T T
284 A A A A A A A
285 T T T T T T T
286 G G G G G G G
287 T T T T T T T
288 T T T T T T T
289 T T T T T T T
290 T T T T T T T
291 C C C C C C C
292 A A A A A A A
293 T T T T T T T
294 G G G G G G G
295 C C C C C C C
296 T T T T T T T
297 A A A A A A A
298 A A A A A A A
299 T T T T T T T
300 C C C C C C C
301 T T T T T T T
302 A A A A A A A
303 T T T T T T T
304 C C C C C C C
305 C C C C C C C
306 A A A A A A T
307 T T T T T T T
308 A A A A A A A
309 T T T T T T T
310 T T T T T T T
311 C C C C C C C
312 T T T T T T T
313 A A A A A A A
314 G G G G G G G
315 T T T T T T T
316 T T T T T T T
317 G G G G G G G
318 A A A A A A A
319 T T T T T T T
320 T T T T T T T
321 T T T T T T T
322 T T T T T T T
323 G G G G G G G
324 C C C C C C C
325 T T T T T T T
326 T T T T T T T
327 . A A A A A A
328 . G C C C C C
329 . . T T T T T
330 . . . . . A A
331 . . . . . A .
332 . . . . . A .
333 . . . . . A .
334 . . . . . A .
335 . . . . . A .
336 . . . . . A .
337 . . . . . A .
338 . . . . . T .
339 . . . . . G .
340 . . . . . A .
341 . . . . . C .